| SAG Strain Number: | 17.86 |
| TAXONOMY |
| Genus: | Scherffelia |
| Species: | dubia |
| Taxonomic position: | Chlorophyta - Chlorodendrophyceae |
| Authority: | Pascher |
| Variety: | |
| Formerly called: | |
| Authentic: | no |
| Division: | Chlorophyta |
| Class: | Chlorodendrophyceae |
| ORIGIN |
| General habitat: | freshwater |
| Climatic zone: | |
| Continent: | Europe |
| Country: | United Kingdom |
| Locality: | Essex, pond in Epping Forest |
| Lat. / Long. (Precision): | 51.692591 / 0.153133 (50m) View on Google Maps |
| Year: | 1983 |
| Isolated by: | H.R. Preisig |
| Strain number by isolator: | |
| Deposition by: | M. Melkonian |
| Deposition date: | 03.1986 |
| CULTURE INFORMATION |
| Culture medium: | MiEB12 |
| Axenic: | bacterial or other types of contamination |
| Strain relatives: | CCAC 0019 |
| Agitation resistance: | not detected |
| Special properties: | NO known Nagoya Protocol restrictions for this strain; |
| |
| PUBLICATIONS |
| Publication: | Turmel, Monique et al. (2016) Distinctive Architecture of the Chloroplast Genome in the Chlorodendrophycean Green Algae Scherffelia dubia and Tetraselmis sp. CCMP 881. PLOS One 11 (2):e0148934 |
| Publication: | Marin B. (2012) Nested in the Chlorellales or independent class? Phylogeny and classification of the Pedinophyceae (Viridiplantae) revealed by molecular phylogenetic analyses of complete nuclear and plastid-encoded rRNA operons. Protist 163 (5):778-805 |
| Publication: | Marin B. et al. (2010) Molecular phylogeny and classification of the Mamiellophyceae class. nov. (Chlorophyta) based on sequence comparisons of the nuclear- and plastidencoded rRNA operons. 161 (2):304-336 |
| Publication: | Simon, D. et al. (2003) Phylogeny and self-splicing ability of the plastid tRNA-Leu group I Intron. J. Mol. Evol. 57 (6):710-720 |
| Publication: | Grunow A. et al. (1999) V-ATPase is a Major Component of the Golgi Complex in the Scaly Green Flagellate Scherffelia dubia. Protist 150 (3):265-281 |
| Publication: | Marin B. et al. (1994) FLAGELLAR HAIRS IN PRASINOPHYTES (CHLOROPHYTA): ULTRASTRUCTURE AND DISTRIBUTION ON THE FLAGELLAR SURFACE. J. Phycol. 30:659-678 |
| Publication: | Reize I.B. et al. (1989) A New Way to Investigate Living Flagellated/Ciliated Cells in the Light Microscope: Immobilization of Cells in Agarose. Bot. Acta 102 (2):145-151 |
| Publication: | Schulze D. et al. (1987) Immunolocalization of a Ca2+ -modulated contractile protein in the flagellar apparatus of green algae: the nucleus-basal body connector. Eur J Cell Biol 45:51-61 |
| Publication: | Melkonian, M. et al. (1986) A light and electron microscopic study of Scherffelia dubia, a new member of the scaly green flagellates (Prasinophyceae). Nordic J. Bot. 6:235-256 |
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| SEQUENCE INFORMATION |
| Sequencing Project: | PRJNA317903 Scherffelia dubia genome reference project |
| Sequence Accession: | AF393609 Scherffelia dubia strain SAG 17.86 voucher SAG:17.86 small subunit ribosomal RNA (rrs), tRNA-Ile (trnI(gau)), tRNA-Ala (trnA(ugc)), and large subunit ribosomal RNA (rrl) genes, complete sequence; and putative site-specific DNA endonuclease (orf167) g (5476 bp) |
| Sequence Accession: | L44126 Scherffelia dubia chloroplast large-subunit ribosomal RNA (rrnL) gene. (3334 bp) |
| Sequence Accession: | KU167098 Scherffelia dubia culture-collection SAG:17.86 plastid, complete genome. (137161 bp) |
| Sequence Accession: | AJ312020 Scherffelia dubia partial mRNA for luminal binding protein (bip gene), strain SAG 17.86 (2040 bp) |
| Sequence Accession: | AJ312021 Scherffelia dubia mRNA for coatomer delta subunit (copd gene), strain SAG 17.86. (1565 bp) |
| Sequence Accession: | AJ306905 Scherffelia dubia erd2 gene, exons 1-6. (2773 bp) |
| Sequence Accession: | AJ011516 Scherffelia dubia mRNA for fructose-bisphosphate aldolase. (1346 bp) |
| Sequence Accession: | AJ131824 Scherffelia dubia mRNA for mannosyl-oligosaccharide 1,2-alpha-mannosidase, partial. (1222 bp) |
| Sequence Accession: | AJ131825 Scherffelia dubia mRNA for mannosyl-oligosaccharide 1,3-1,6-alpha-mannosidase, partial. (268 bp) |
| Sequence Accession: | HE610128 Scherffelia dubia 18S rRNA gene (partial), 5.8S rRNA gene, 28S rRNA gene (partial), ITS1 and ITS2, strain SAG 17.86. (3981 bp) |
| Sequence Accession: | AJ131823 Scherffelia dubia mRNA for H(+)-transporting ATP synthase subunit A. (2281 bp) |
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| CRYO |
| Cryopreservation: | not detected |
| TEACHING |
| Recommended for teaching: | no |
