SAG 1965-3 Pedinomonas minor
| SAG Strain Number: | 1965-3 |
| TAXONOMY | |
| Genus: | Pedinomonas |
| Species: | minor |
| Taxonomic position: | Chlorophyta - Chlorophyceae |
| Authority: | Korshikov |
| Variety: | |
| Formerly called: | |
| Authentic: | no |
| Division: | Chlorophyta |
| Class: | Chlorophyceae |
| Common name: | Green Algae - Chlorophytes |
| ORIGIN | |
| General habitat: | freshwater |
| Climatic zone: | |
| Continent: | Europe |
| Country: | Slovakia |
| Locality: | plankton of River Danube at Bratislava |
| Lat. / Long. (Precision): | 48.129205 / 17.142391 (5500m) View on Google Maps |
| Year: | 1959 |
| Isolated by: | F. Hindák |
| Strain number by isolator: | 1959/17 |
| Deposition by: | F. Hindák |
| Deposition date: | |
| CULTURE INFORMATION | |
| Culture medium: | ESP Ag |
| Axenic: | axenic |
| Strain relatives: | CCAP 1965/3B; UTEX 1350 |
| Agitation resistance: | yes |
| Special properties: | NO known Nagoya Protocol restrictions for this strain; OneKP Sample ID: RRSV; genome assemblies, annotation and raw data from Xu et al. 2022 are deposited at the CNGB Nucleotide SequenceArchive (CNSA: http://db.cngb.org/cnsa, accession no.CNP0002569). SAG 08/2022 |
| PUBLICATIONS | |
| Publication: | Puginier C. et al. (2024) Phylogenomics reveals the evolutionary origins of lichenization in chlorophyte algae. Nat. Comm. 15 (1):4452 |
| Publication: | Xu Y. et al. (2022) Chromosome-level genome of Pedinomonas minor (Chlorophyta) unveils adaptations to abiotic stress in a rapidly fluctuating environment. New Phytol. 235 (4):1409-1425 |
| Publication: | Goh F.Q.Y. et al. (2019) Gains and losses of metabolic function inferred from a phylotranscriptomic analysis of algae. Sci. Rep. 9:10482 |
| Publication: | Aiyar P. et al. (2017) Antagonistic bacteria disrupt calcium homeostasis and immobilize algal cells. Nat. Commun. 8 (1):1756 |
| Publication: | Marin B. (2012) Nested in the Chlorellales or independent class? Phylogeny and classification of the Pedinophyceae (Viridiplantae) revealed by molecular phylogenetic analyses of complete nuclear and plastid-encoded rRNA operons. Protist 163 (5):778-805 |
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| SEQUENCE INFORMATION | |
| Sequence Accession: | HE610132 Pedinomonas minor 18S rRNA gene (partial), 5.8S rRNA gene, 28S rRNA gene (partial), ITS1 and ITS2, strain SAG 1965-3. (6912 bp) |
| Sequence Accession: | ERS1830155 1000 Plants (1kP) RNA-Seq Transcriptome Sample ID: RRSV (0 bp) |
| CRYO | |
| Cryopreservation: | not detected |
| TEACHING | |
| Recommended for teaching: | no |
