SAG Strain Number: | 1965-3 |
TAXONOMY | |
Genus: | Pedinomonas |
Species: | minor |
Taxonomic position: | Chlorophyta - Chlorophyceae |
Authority: | Korshikov |
Variety: | |
Formerly called: | |
Authentic: | no |
Division: | Chlorophyta |
Class: | Chlorophyceae |
Common name: | Green Algae - Chlorophytes |
ORIGIN | |
General habitat: | freshwater |
Climatic zone: | |
Continent: | Europe |
Country: | Slovakia |
Locality: | plankton of River Danube at Bratislava |
Lat. / Long. (Precision): | 48.129205 / 17.142391 (5500m) View on Google Maps |
Year: | 1959 |
Isolated by: | F. Hindák |
Strain number by isolator: | 1959/17 |
Deposition by: | F. Hindák |
Deposition date: | |
CULTURE INFORMATION | |
Culture medium: | ESP Ag |
Axenic: | axenic |
Strain relatives: | CCAP 1965/3B; UTEX 1350 |
Agitation resistance: | yes |
Special properties: | genome assemblies, annotation and raw data from Xu et al. 2022 are deposited at the CNGB Nucleotide SequenceArchive (CNSA: http://db.cngb.org/cnsa, accession no.CNP0002569). SAG 08/2022 |
PUBLICATIONS | |
Publication: | Xu Y. et al. (2022) Chromosome-level genome of Pedinomonas minor (Chlorophyta) unveils adaptations to abiotic stress in a rapidly fluctuating environment. New Phytol. 235 (4):1409-1425 |
Publication: | Goh F.Q.Y. et al. (2019) Gains and losses of metabolic function inferred from a phylotranscriptomic analysis of algae. Sci. Rep. 9:10482 |
Publication: | Aiyar P. et al. (2017) Antagonistic bacteria disrupt calcium homeostasis and immobilize algal cells. Nat. Commun. 8 (1):1756 |
Publication: | Marin, B. (2012) Nested in the Chlorellales or independent class? Phylogeny and classification of the Pedinophyceae (Viridiplantae) revealed by molecular phylogenetic analyses of complete nuclear and plastid-encoded rRNA operons. Protist 163 (5):778-805 |
Publication: | Matsuda Y. et al. (1987) Cell walls of algae in the volvocales: Their sensitivity to a cell wall lytic enzyme and labeling with an anti-cell wall glycopeptide of Chlamydomonas reinhardtii. Bot. Mag. Tokyo 100 (4):373-384 |
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SEQUENCE INFORMATION | |
Sequence Accession: | HE610132 Pedinomonas minor 18S rRNA gene (partial), 5.8S rRNA gene, 28S rRNA gene (partial), ITS1 and ITS2, strain SAG 1965-3. (6912 bp) |
Sequence Accession: | ERS1830155 1000 Plants (1kP) RNA-Seq Transcriptome Sample ID: RRSV (0 bp) |
CRYO | |
Cryopreservation: | not detected |
TEACHING | |
Recommended for teaching: | no |