| SAG Strain Number: | 20.94 |
| TAXONOMY |
| Genus: | Trentepohlia |
| Species: | annulata |
| Taxonomic position: | Chlorophyta - Ulvophyceae |
| Authority: | Brand |
| Variety: | |
| Formerly called: | |
| Authentic: | no |
| Division: | Chlorophyta |
| Class: | Ulvophyceae |
| Common name: | Green Algae - Chlorophytes |
| ORIGIN |
| General habitat: | subaerial |
| Climatic zone: | temperate |
| Continent: | Europe |
| Country: | former Czechoslovakia |
| Locality: | Damasská cesta pobl. Svratky, Ceskomoravská vrchovina |
| Lat. / Long. (Precision): | 49.707608 / 16.021385 (15000m) View on Google Maps |
| Year: | 1946 |
| Isolated by: | S. Lhotsky (leg. S. Prat) |
| Strain number by isolator: | Prague A 197 |
| Deposition by: | H. Kreisel (< Coll. Hübel, Hiddensee) |
| Deposition date: | 11.1993 |
| CULTURE INFORMATION |
| Culture medium: | ESP Ag |
| Axenic: | bacterial or other types of contamination |
| Strain relatives: | |
| Agitation resistance: | not detected |
| Special properties: | NO known Nagoya Protocol restrictions for this strain; OneKP Sample ID: NATT |
| |
| PUBLICATIONS |
| Publication: | Puginier C. et al. (2024) Phylogenomics reveals the evolutionary origins of lichenization in chlorophyte algae. Nat. Comm. 15 (1):4452 |
| Publication: | Dorrell R.G. et al. (2023) Presence of vitamin B12 metabolism in the last common ancestor of land plants. bioRxiv :2023.06.07.544158 |
| Publication: | Fucikova K. et al. (2014) New phylogenetic hypotheses for the core Chlorophyta based on chloroplast sequence data. Frontiers in Ecology and Evolution 2 |
| Publication: | del Campo,E.M. et al. (2010) A single primer pair gives a specific ortholog amplicon in a wide range of Cyanobacteria and plastid-bearing organisms: applicability in inventory of reference material from collections and phylogenetic analysis. Mol. Phylogenet. Evol. 57 (3):1323-1328 |
| Publication: | Rindi, F. et al. (2009) Phylogenetic relationships and species circumscription in Trentepohlia and Printzina (Trentepohliales, Chlorophyta). J. Phylogen. Evol. 52 (2):329-339 |
| SEQUENCE INFORMATION |
| Sequence Accession: | KM020077 Trentepohlia annulata strain SAG 20.94 18S ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; and 26S ribosomal RNA gene, partial sequence. (2404 bp) |
| Sequence Accession: | JQ687378 Trentepohlia annulata 18S ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; and 28S ribosomal RNA gene, partial sequence. (882 bp) |
| Sequence Accession: | GQ168951 Trentepohlia annulata strain SAG 20.94 D1/32 kD photosystem II reaction center protein (psbA) gene, partial cds; chloroplast. (334 bp) |
| Sequence Accession: | KM491845 Trentepohlia annulata photosystem II protein T (psbT) gene, complete cds; chloroplast. (576 bp) |
| Sequence Accession: | KM491841 Trentepohlia annulata photosystem II protein K (psbK) gene, complete cds; chloroplast. (383 bp) |
| Sequence Accession: | KM491839 Trentepohlia annulata photosystem II reaction center subunit X (psbJ) gene, complete cds; chloroplast. (751 bp) |
| Sequence Accession: | KM491834 Trentepohlia annulata photosystem II reaction center protein H (psbH) gene, complete cds; chloroplast. (448 bp) |
| Sequence Accession: | KM491831 Trentepohlia annulata photosystem II reaction center subunit VI (psbF) gene, complete cds; chloroplast. (550 bp) |
| Sequence Accession: | KM491826 Trentepohlia annulata cytochrome b559 alpha subunit (psbE) gene, complete cds; chloroplast. (219 bp) |
| Sequence Accession: | KM491824 Trentepohlia annulata photosystem II protein D2 (psbD) gene, complete cds; chloroplast. (1059 bp) |
| Sequence Accession: | KM491820 Trentepohlia annulata photosystem II P680 chlorophyll A apoprotein (psbB) gene, partial cds; chloroplast. (702 bp) |
| Sequence Accession: | KM491811 Trentepohlia annulata cytochrome b6 (petB) gene, complete cds; chloroplast. (645 bp) |
| Sequence Accession: | KM491802 Trentepohlia annulata ATPase III subunit (atpH) gene, complete cds; chloroplast. (249 bp) |
| Sequence Accession: | KM491796 Trentepohlia annulata ATPase beta chain (atpB) gene, complete cds; chloroplast. (1467 bp) |
| Sequence Accession: | KM464717 Trentepohlia annulata elongation factor 1-alpha (tufA) gene, complete cds; chloroplast. (1230 bp) |
| Sequence Accession: | KM464712 Trentepohlia annulata ribulose-1,5-bisphosphate carboxylase/oxygenase large subunit (rbcL) gene, complete cds; chloroplast. (1425 bp) |
| Sequence Accession: | KM464706 Trentepohlia annulata PSII 43 kDa protein (psbC) gene, partial cds; chloroplast. (1350 bp) |
| Sequence Accession: | KM464705 Trentepohlia annulata photosystem II protein D1 (psbA) gene, complete cds; chloroplast. (1035 bp) |
| Sequence Accession: | KM464697 Trentepohlia annulata PSI P700 apoprotein A2 (psaB) gene, partial cds; chloroplast. (2154 bp) |
| Sequence Accession: | KM464692 Trentepohlia annulata PSI P700 apoprotein A1 (psaA) gene, partial cds; chloroplast. (2237 bp) |
| Sequence Accession: | KM464689 Trentepohlia annulata ATP synthase CF1 alpha chain (atpA) gene, complete cds; chloroplast. (1506 bp) |
| Sequence Accession: | GQ921944 Trentepohlia annulata 23S large subunit ribosomal RNA (rrnL) gene, partial sequence; chloroplast. (656 bp) |
| Sequence Accession: | DQ399588 Trentepohlia annulata strain SAG 20.94 18S ribosomal RNA gene, partial sequence. (1689 bp) |
| Sequence Accession: | ERS1830146 1000 Plants (1kP) RNA-Seq Transcriptome Sample ID: NATT (0 bp) |
| Sequence Accession: | SAMN24199010 MIGS Eukaryotic sample from Trentepohlia annulata (0 bp) |
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| CRYO |
| Cryopreservation: | standard 5% MetOH; low survival; 30d regrowth |
| TEACHING |
| Recommended for teaching: | no |
