| SAG Strain Number: | 219-1d |
| TAXONOMY |
| Genus: | Trebouxia |
| Species: | aggregata |
| Taxonomic position: | Chlorophyta - Trebouxiophyceae |
| Authority: | (Archibald) Gärtner |
| Variety: | |
| Formerly called: | |
| Authentic: | yes |
| Division: | Chlorophyta |
| Class: | Trebouxiophyceae |
| ORIGIN |
| General habitat: | phycobiont |
| Climatic zone: | |
| Continent: | |
| Country: | |
| Locality: | phycobiont of lichen Xanthoria parientina |
| Lat. / Long. (Precision): | |
| Year: | before 1945 |
| Isolated by: | A. Quispel |
| Strain number by isolator: | as Cystococcus humicola |
| Deposition by: | |
| Deposition date: | |
| CULTURE INFORMATION |
| Culture medium: | ESP Ag |
| Axenic: | axenic |
| Strain relatives: | CCAP 219/1D; UTEX 180 as Pseudotrebouxia aggregata |
| Agitation resistance: | not detected |
| Special properties: | NO known Nagoya Protocol restrictions for this strain |
| |
| PUBLICATIONS |
| Publication: | Petrzik, K. et al. (2015) Platinum Anniversary: Virus and Lichen Alga Together More than 70 Years. PLoS ONE 10 (3):e0120768 |
| Publication: | Fucikova K. et al. (2014) New phylogenetic hypotheses for the core Chlorophyta based on chloroplast sequence data. Frontiers in Ecology and Evolution 2 |
| Publication: | Lemieux C. et al. (2014) Chloroplast phylogenomic analysis resolves deep-level relationships within the green algal class Trebouxiophyceae. BMC Evol. Biol. 14:211 |
| Publication: | Quispel, A. (1943) The mutual relations between algae and fungi in lichens. Rec. trav. bot. Néerl. 40:413-541 |
| SEQUENCE INFORMATION |
| Sequence Accession: | L43542 Trebouxia aggregata culture-collection SAG:219-1d large-subunit ribosomal RNA gene, partial sequence; and unknown gene; chloroplast. (5398 bp) |
| Sequence Accession: | EU124002 Trebouxia aggregata strain SAG 219-1d ribosomal protein L20 (rpl20) gene, complete cds; chloroplast. (765 bp) |
| Sequence Accession: | EU124000 Trebouxia aggregata strain SAG 219-1d hypothetical chloroplast RF20 (ycf20) gene, partial cds; and tRNA-Cys (trnC(gca)) gene, complete sequence; chloroplast. (1691 bp) |
| Sequence Accession: | EU123997 Trebouxia aggregata strain SAG 219-1d ChlN subunit of protochlorophyllide reductase (chlN) gene, partial cds; chloroplast. (2144 bp) |
| Sequence Accession: | EU123992 Trebouxia aggregata strain SAG 219-1d CF0 subunit I of ATP synthase (atpF) and CF0 subunit III of ATP synthase (atpH) genes, complete cds; chloroplast. (3300 bp) |
| Sequence Accession: | EU123990 Trebouxia aggregata strain SAG 219-1d M polypeptide of photosystem I (psaM), hypothetical chloroplast RF12 (ycf12), and K protein of photosystem II (psbK) genes, complete cds; and magnesium chelatase subunit of protochlorophyllide (chlI) gene, partia (7656 bp) |
| Sequence Accession: | EU123988 Trebouxia aggregata strain SAG 219-1d subunit VIII of photosystem I (psaI) gene, complete cds; tRNA-Val (trnV(uac)), tRNA-Leu (trnL(caa)), and tRNA-Asp (trnD(guc)) genes, complete sequence; and CF1 epsilon subunit of ATP synthase (atpE) and CF1 beta (11461 bp) |
| Sequence Accession: | EU123985 Trebouxia aggregata strain SAG 219-1d tRNA-Tyr (trnY(gua)) and tRNA-Thr (trnT(ggu)) genes, complete sequence; and hypothetical chloroplast RF4 (ycf4) gene, complete cds; chloroplast. (3756 bp) |
| Sequence Accession: | EU123983 Trebouxia aggregata strain SAG 219-1d D1 reaction center protein of photosystem II (psbA) and hypothetical protein (orf341) genes, complete cds; and tRNA-His (trnH(gug)) and tRNA-Gly (trnG(ucc)) genes, complete sequence; chloroplast. (5100 bp) |
| Sequence Accession: | EU123981 Trebouxia aggregata strain SAG 219-1d M protein of photosystem II (psbM) gene, complete cds; chloroplast. (1000 bp) |
| Sequence Accession: | EU123979 Trebouxia aggregata strain SAG 219-1d large subunit ribosomal RNA (rrl) gene, complete sequence; and putative site-specific DNA endonuclease (orf210) and hypothetical protein (orf277) genes, complete cds; chloroplast. (9317 bp) |
| Sequence Accession: | EU123976 Trebouxia aggregata strain SAG 219-1d probable transport protein (cysT), hypothetical chloroplast RF1 (ycf1), ribosomal protein S12 (rps12), ribosomal protein S7 (rps7), translational elongation factor Tu (tufA), and ribosomal protein L19 (rpl19) gen (19450 bp) |
| Sequence Accession: | EU123974 Trebouxia aggregata strain SAG 219-1d D2 reaction center protein of photosystem II (psbD), CP43 chlorophyll apoprotein of photosystem II (psbC), apocytochrome b6 of cytochrome b6/f complex (petB), and subunit IV of cytochrome b6/f complex (petD) gene (9520 bp) |
| Sequence Accession: | EU123972 Trebouxia aggregata strain SAG 219-1d J protein of photosystem II (psbJ), L protein of photosystem II (psbL), cytochrome b559 beta subunit of photosystem II (psbF), and cytochrome b559 alpha subunit of photosystem II (psbE) genes, complete cds; chlor (10386 bp) |
| Sequence Accession: | EU123970 Trebouxia aggregata strain SAG 219-1d ATP-binding subunit of protochlorophyllide (chlL) gene, complete cds; and heme attachment to plastid cytochrome c (ccsA) gene, partial cds; chloroplast. (6336 bp) |
| Sequence Accession: | EU123968 Trebouxia aggregata strain SAG 219-1d hypothetical chloroplast RF3 (ycf3) gene, complete cds; and tRNA-Arg (trnR(ccg)) gene, complete sequence; chloroplast. (7259 bp) |
| Sequence Accession: | EU123966 Trebouxia aggregata strain SAG 219-1d tRNA-Ala (trnA(ugc)) gene, complete sequence; and ribosomal protein L23 (rpl23) and ribosomal protein L2 (rpl2) genes, complete cds; chloroplast. (6649 bp) |
| Sequence Accession: | EU123963 Trebouxia aggregata strain SAG 219-1d subunit IX of photosystem I (psaJ) gene, complete cds; chloroplast. (5000 bp) |
| Sequence Accession: | EU123948 Trebouxia aggregata strain SAG 219-1d ribosomal protein S2 (rps2) gene, complete cds; tRNA-Met (trnMe(cau)) and large subunit ribosomal RNA (rnl) genes, complete sequence; putative site-specific DNA endonuclease (orf365) gene, complete cds; small sub (37568 bp) |
| Sequence Accession: | EU123946 Trebouxia aggregata strain SAG 219-1d NADH dehydrogenase subunit 4L (nad4L), NADH dehydrogenase subunit 6 (nad6), ATP synthase F0 subunit beta (atp4), cytochrome c oxidase subunit 3 (cox3), cytochrome c oxidase subunit 2 (cox2), and ATP synthase F0 s (26087 bp) |
| Sequence Accession: | EU123944 Trebouxia aggregata strain SAG 219-1d tRNA-Asp (trnD(guc)), tRNA-Cys (trnC(gca)), tRNA-Asn (trnN(guu)), tRNA-Ile (trnI(cau)), and tRNA-Ile (trnI(gau)) genes, complete sequence; ribosomal protein L6 (rpl6), ribosomal protein S13 (rps13), ribosomal pro (22794 bp) |
| Sequence Accession: | EU124001 Trebouxia aggregata strain SAG 219-1d subunit VII of photosystem I (Fe-Spolypeptide) (psaC) gene, complete cds; chloroplast. (2573 bp) |
| Sequence Accession: | EU123998 Trebouxia aggregata strain SAG 219-1d chloroplast envelope membrane protein (cemA) gene, partial cds; chloroplast. (1314 bp) |
| Sequence Accession: | EU123994 Trebouxia aggregata strain SAG 219-1d tRNA-Trp (trnW(cca)) gene, complete sequence; and probable transport protein (cysA) and beta subunit of acetyl-CoA carboxylase (accD) genes, complete cds; chloroplast. (8350 bp) |
| Sequence Accession: | EU123991 Trebouxia aggregata strain SAG 219-1d beta'' subunit of RNA polymerase (rpoC2) gene, partial cds; chloroplast. (2950 bp) |
| Sequence Accession: | EU123989 Trebouxia aggregata strain SAG 219-1d CF0 subunit IV of ATP synthase (atpI) gene, complete cds; chloroplast. (1950 bp) |
| Sequence Accession: | EU123984 Trebouxia aggregata strain SAG 219-1d ribosomal protein S18 (rps18) and ribosomal protein S14 (rps14) genes, complete cds; chloroplast. (2327 bp) |
| Sequence Accession: | EU123982 Trebouxia aggregata strain SAG 219-1d CF1 alpha subunit of ATP synthase (atpA) gene, complete cds; chloroplast. (6150 bp) |
| Sequence Accession: | EU123980 Trebouxia aggregata strain SAG 219-1d ribosomal protein S9 (rps9), ribosomal protein L12 (rpl12), and ribosomal protein S2 (rps2) genes, complete cds; chloroplast. (5300 bp) |
| Sequence Accession: | EU123978 Trebouxia aggregata strain SAG 219-1d ribosomal protein S19 (rps19), ribosomal protein S3 (rps3), ribosomal protein L16 (rpl16), ribosomal protein L14 (rpl14), ribosomal protein L5 (rpl5), and ribosomal protein S8 (rps8) genes, complete cds; chloropl (9550 bp) |
| Sequence Accession: | EU123975 Trebouxia aggregata strain SAG 219-1d P700 apoprotein A1 of photosystem I (psaA), P700 apoprotein A2 of photosystem I (psaB), and hypothetical protein (orf262) genes, complete cds; chloroplast. (9750 bp) |
| Sequence Accession: | EU123973 Trebouxia aggregata strain SAG 219-1d septum site-determining protein (minD) gene, complete cds; tRNA-Arg (trnR(acg)) gene, complete sequence; and apocytochrome f of cytochrome b6/f complex (petA) gene, complete cds; chloroplast. (10700 bp) |
| Sequence Accession: | EU123971 Trebouxia aggregata strain SAG 219-1d beta subunit of RNA polymerase (rpoB) and beta' subunit of RNA polymerase (rpoC1) genes, complete cds; and beta'' subunit of RNA polymerase (rpoC2) gene, partial cds; chloroplast. (14884 bp) |
| Sequence Accession: | EU123969 Trebouxia aggregata strain SAG 219-1d tRNA-Asn (trnN(guu)), tRNA-Met (trnMe(cau)), and tRNA-Leu (trnL(uag)) genes, complete sequence; and ribosomal protein L32 (rpl32) gene, complete cds; chloroplast. (5750 bp) |
| Sequence Accession: | EU123967 Trebouxia aggregata strain SAG 219-1d ribulose-1,5-bisphosphate carboxylase/oxygenase large subunit (rbcL) gene, complete cds; chloroplast. (2950 bp) |
| Sequence Accession: | EU123964 Trebouxia aggregata strain SAG 219-1d CP47 chlorophyll apoprotein of photosystem II (psbB), putative site-specific DNA endonuclease (orf294), T protein of photosystem II (psbT), N protein of photosystem II (psbN), 10 KDa phosphoprotein of photosystem (16129 bp) |
| Sequence Accession: | EU123962 Trebouxia aggregata strain SAG 219-1d cell division protein (ftsH) gene, complete cds; chloroplast. (8354 bp) |
| Sequence Accession: | EU123949 Trebouxia aggregata strain SAG 219-1d NADH dehydrogenase subunit 9 (nad9) and ribosomal protein S10 (rps10) genes, complete cds; tRNA-Leu (trnL(uag)) gene, complete sequence; ATP synthase F0 subunit 6 (atp6) gene, complete cds; tRNA-Gly (trnG(ucc)), (17247 bp) |
| Sequence Accession: | EU123947 Trebouxia aggregata strain SAG 219-1d tRNA-Ala (trnA(ugc)), tRNA-Ser (trnS(gcu)), and tRNA-Arg (trnR(ucu)) genes, complete sequence; NADH dehydrogenase subunit 5 (nad5) and NADH dehydrogenase subunit 4 (nad4) genes, complete cds; and tRNA-Gly (trnG(g (11844 bp) |
| Sequence Accession: | EU123945 Trebouxia aggregata strain SAG 219-1d NADH dehydrogenase subunit 1 (nad1) and ATP synthase F1 subunit alpha (atp1) genes, complete cds; tRNA-Trp (trnW(cca)) and tRNA-Leu (trnL(uaa)) genes, complete sequence; and NADH dehydrogenase subunit 7 (nad7) an (14516 bp) |
| Sequence Accession: | EU123987 Trebouxia aggregata strain SAG 219-1d subunit VI of cytochrome b6/f complex (petL) gene, complete cds; chloroplast. (2350 bp) |
| Sequence Accession: | EU123986 Trebouxia aggregata strain SAG 219-1d translational initiation factor 1 (infA), ribosomal protein L36 (rpl36), ribosomal protein S11 (rps11), and alpha subunit of RNA polymerase (rpoA) genes, complete cds; chloroplast. (7664 bp) |
| Sequence Accession: | EU123942 Trebouxia aggregata strain SAG 219-1d 18S ribosomal RNA gene, partial sequence. (1701 bp) |
| Sequence Accession: | EU123999 Trebouxia aggregata strain SAG 219-1d tRNA-Pro (trnP(ggg)) gene, complete sequence; chloroplast. (796 bp) |
| Sequence Accession: | EU123995 Trebouxia aggregata strain SAG 219-1d tRNA-Lys (trnK(uuu)) and tRNA-Ile (trnI(cau)) genes, complete sequence; chloroplast. (2377 bp) |
| Sequence Accession: | EU123965 Trebouxia aggregata strain SAG 219-1d tRNA-Phe (trnF(gaa)) gene, complete sequence; chloroplast. (3250 bp) |
| Sequence Accession: | EU123996 Trebouxia aggregata strain SAG 219-1d tRNA-Glu (trnE(uuc)) gene, complete sequence; chloroplast. (1476 bp) |
| Sequence Accession: | EU123993 Trebouxia aggregata strain SAG 219-1d small-subunit ribosomal RNA (rrs), 5S ribosomal RNA (rrf), and tRNA-Gly (trnG(gcc)) genes, complete sequence; chloroplast. (5610 bp) |
| Sequence Accession: | EU123977 Trebouxia aggregata strain SAG 219-1d tRNA-Gln (trnQ(uug)) and tRNA-Ser (trnS(uga)) genes, complete sequence; chloroplast. (2500 bp) |
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| CRYO |
| Cryopreservation: | medium survival |
| TEACHING |
| Recommended for teaching: | no |
