| SAG Strain Number: | 263-11 |
| TAXONOMY |
| Genus: | Prototheca |
| Species: | xanthoriae |
| Taxonomic position: | Chlorophyta - Trebouxiophyceae |
| Authority: | Jagielski et al. |
| Variety: | |
| Formerly called: | P. wickerhamii Tubaki et Soneda; P. viscosa Pringsheim nom. nud. |
| Authentic: | yes |
| Division: | Chlorophyta |
| Class: | Trebouxiophyceae |
| ORIGIN |
| General habitat: | epiphyte |
| Climatic zone: | |
| Continent: | |
| Country: | |
| Locality: | from lichen Xanthoria parietina |
| Lat. / Long. (Precision): | |
| Year: | 1952 |
| Isolated by: | received from M. B. Allen |
| Strain number by isolator: | as IV-7.3.7.1 P. spec |
| Deposition by: | M. B. Allen |
| Deposition date: | |
| CULTURE INFORMATION |
| Culture medium: | Malz Ag |
| Axenic: | axenic |
| Strain relatives: | |
| Agitation resistance: | not detected |
| Special properties: | NO known Nagoya Protocol restrictions for this strain; OneKP Sample ID: BILC; colourless; potentially pathogenic! Risk Level 2 > restricted distribution! Handle with care!; non-authentic strain SAG 263-11 Prototheca wickerhamii Tubaki et Soneda reassigned into type strain of P. xanthoriae sp. nov. Jagielski et al. 2019. SAG 06/2022 |
| |
| PUBLICATIONS |
| Publication: | Plieger T. et al. (2022) 18S and ITS2 rDNA sequence-structure phylogeny of Prototheca (Chlorophyta, Trebouxiophyceae). Biologia 77:569-582 |
| Publication: | Dziurzynski M. et al. (2021) Prototheca-ID: a web-based application for molecular identification of Prototheca species. Database 2021:baab073 |
| Publication: | Shave C.D. et al. (2021) Now for something completely different: Prototheca, pathogenic algae. PLoS Patho 17 (4):e1009362 |
| Publication: | Goh F.Q.Y. et al. (2019) Gains and losses of metabolic function inferred from a phylotranscriptomic analysis of algae. Sci. Rep. 9:10482 |
| Publication: | Jagielski T. et al. (2019) The genus Prototheca (Trebouxiophyceae, Chlorophyta) revisited: Implications from molecular taxonomic studies. Algal Res. 43:101639 |
| Publication: | Jagielski T. et al. (2018) 3-Bromopyruvate as an Alternative Option for the Treatment of Protothecosis. Front. Pharmacol. 9:375 |
| Publication: | Figueroa-Martinez F. et al. (2015) When the lights go out: the evolutionary fate of free-living colorless green algae. New Phytologist 206 (3):972-982 |
| Publication: | Yan D. et al. (2015) Auxenochlorella protothecoides and Prototheca wickerhamii plastid genome sequences give insight into the origins of non-photosynthetic algae. Scientific Reports 5:14465 |
| Publication: | Ewing A. et al. (2014) 16S and 23S plastid rDNA phylogenies of Prototheca species and their auxanographic phenotypes. J. Phycol. 50 (4):765-769 |
| Publication: | Hirose N. et al. (2013) Ribosomal Internal Transcribed Spacer of Prototheca wickerhamii Has Characteristic Structure Useful for Identification and Genotyping. PLOS One 8 (11):e81223 |
| Publication: | Marques S. et al. (2008) Bovine mastitis associated with Prototheca blaschkeae. Journal of Clinical Microbiology 46:1941-1945 |
| Publication: | Borza T. et al. (2005) Multiple Metabolic Roles for the Nonphotosynthetic Plastid of the Green Alga Prototheca wickerhamii. Eukaryotic Cell 4 (2):253-261 |
| Publication: | Ueno R. et al. (2005) Molecular phylogeny and phenotypic variation in the heterotrophic green algal genus Prototheca (Trebouxiophyceae, Chlorophyta). J. Phycol. 41:1268-1280 |
| Publication: | Ueno R. et al. (2003) Phylogeny of the non-photosynthetic green micro-algal genus Prototheca (Trebouxiophyceae, Chlorophyta) and related taxa inferred from SSU and LSU ribosomal DNA partial sequence data. FEMS Microbiol. Lett. 223 (2):275-280 |
| Publication: | Knauf U. et al. (2002) The genes encoding subunits of ATP synthase are conserved in the reduced plastid genome of the heterotrophic alga Prototheca wickerhamii. Mol. Gen. Genomics 267 (4):492-497 |
| Publication: | Huss, V.A.R. et al. (1999) Biochemical taxonomy and molecular phylogeny of the genus Chlorella sensu lato (Chlorophyta). J. Phycol. 35:587-598 |
| Publication: | Hayashi-Ishimaru Y. et al. (1996) UAG is a sense codon in several chlorophycean mitochondria. Curr. Gen. 30:29-33 |
| Publication: | Wolff G. et al. (1996) Transcript mapping and processing of mitochondrial RNA in the chlorophyte alga Prototheca wickerhamii. 30 (3):577-595 |
| Publication: | Wolff G. et al. (1994) Complete Sequence of the Mitochondrial DNA of the Chlorophyte Alga Prototheca wickerhamii: Gene Content and Genome Organization. 237 (1):75-86 |
| Publication: | Wolff G. et al. (1993) Mitochondrial genes in the colourless alga Prototheca wickerhamii resemble plant genes in their exons but fungal genes in their introns. Nucl. Acids Res. 21 (3):719-726 |
| Publication: | Wolff G. et al. (1990) The structural analysis of the mitochondrial SSUrRNA implies a close phylogenetic relationship between mitochondria from plants and from the heterotrophic alga Prototheca wickerhamii. Curr Genet. 17 (4):347–351 |
| Publication: | Kerfin W. et al. (1978) Physiological and Biochemical Contributions to the Taxonomy of the Genus Prototheca II. Starch Hydrolysis and Base Composition of DNA. Arch. Microbiol. 116 (1):105-107 |
| Publication: | Kessler E. (1977) Physiological and Biochemical Contributions to the Taxonomy of the Genus Prototheca I. Hydrogenase, Acid Tolerance, Salt Tolerance, Thermophily, and Liquefaction of Gelatin. Arch. Microbiol. 113:139-141 |
| Publication: | Tubaki K. et al. (1959) Cultural and taxonomical studies on Prototheca. Nagaoa 6:25-33 |
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| SEQUENCE INFORMATION |
| Sequencing Project: | PRJNA11807 Prototheca wickerhamii mitochondrion, complete genome |
| Sequence Accession: | MK452831 Prototheca xanthoriae strain SAG 263-11 cytochrome b (cytB) gene, partial cds; mitochondrial (599 bp) |
| Sequence Accession: | MK445211 Prototheca sp. ZB-2019e strain SAG 263-11 small subunit ribosomal RNA gene, partial sequence. (1808 bp) |
| Sequence Accession: | MK445175 Prototheca sp. ZB-2019e strain SAG 263-11 small subunit ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; and large subunit ribosomal RNA gene, partial (719 bp) |
| Sequence Accession: | MK445221 Prototheca sp. ZB-2019e strain SAG 263-11 large subunit ribosomal RNA gene, partial sequence. (600 bp) |
| Sequence Accession: | AY700206 Prototheca wickerhamii strain SAG 263-11 plastid NADP+ glutamate dehydrogenase mRNA, partial cds; nuclear gene for plastid product. (643 bp) |
| Sequence Accession: | AY700207 Prototheca wickerhamii strain SAG 263-11 plastid acetylglutamate kinase mRNA, partial cds; nuclear gene for plastid product. (688 bp) |
| Sequence Accession: | AY700208 Prototheca wickerhamii strain SAG 263-11 plastid argininosuccinate lyase mRNA, partial cds; nuclear gene for plastid product. (653 bp) |
| Sequence Accession: | AY700209 Prototheca wickerhamii strain SAG 263-11 plastid histidinol-phosphate transaminase mRNA, partial cds; nuclear gene for plastid product. (674 bp) |
| Sequence Accession: | DQ228175 Prototheca wickerhamii strain SAG 263-11 plastid 50S ribosomal protein L4 family mRNA, partial cds; nuclear gene for plastid product. (751 bp) |
| Sequence Accession: | DQ228176 Prototheca wickerhamii strain SAG 263-11 plastid 50S ribosomal protein L15 mRNA, partial cds; nuclear gene for plastid product. (570 bp) |
| Sequence Accession: | DQ228177 Prototheca wickerhamii strain SAG 263-11 plastid 30S ribosomal protein S1 mRNA, partial cds; nuclear gene for plastid product. (896 bp) |
| Sequence Accession: | DQ228178 Prototheca wickerhamii strain SAG 263-11 plastid 30S ribosomal protein S20 mRNA, partial cds; nuclear gene for plastid product. (448 bp) |
| Sequence Accession: | DQ228179 Prototheca wickerhamii strain SAG 263-11 plastid endoribonuclease mRNA, partial cds; nuclear gene for plastid product. (480 bp) |
| Sequence Accession: | DQ228180 Prototheca wickerhamii strain SAG 263-11 plastid heat shock protein 90C mRNA, partial cds; nuclear gene for plastid product. (679 bp) |
| Sequence Accession: | DQ228181 Prototheca wickerhamii strain SAG 263-11 plastid 14-3-3 protein GF14 nu-like mRNA, partial cds; nuclear gene for plastid product. (607 bp) |
| Sequence Accession: | DQ228182 Prototheca wickerhamii strain SAG 263-11 plastid DegP protease mRNA, partial cds; nuclear gene for plastid product. (670 bp) |
| Sequence Accession: | DQ228183 Prototheca wickerhamii strain SAG 263-11 plastid outer membrane protein mRNA, partial cds; nuclear gene for plastid product. (774 bp) |
| Sequence Accession: | DQ228184 Prototheca wickerhamii strain SAG 263-11 plastid vesicle-inducing protein mRNA, partial cds; nuclear gene for plastid product. (474 bp) |
| Sequence Accession: | DQ228185 Prototheca wickerhamii strain SAG 263-11 plastid nitrite transporter mRNA, partial cds; nuclear gene for plastid product. (733 bp) |
| Sequence Accession: | DQ228186 Prototheca wickerhamii strain SAG 263-11 plastid permease-like protein mRNA, partial cds; nuclear gene for plastid product. (801 bp) |
| Sequence Accession: | DQ228187 Prototheca wickerhamii strain SAG 263-11 plastid Glucose-6-phosphate dehydrogenase mRNA, partial cds; nuclear gene for plastid product. (747 bp) |
| Sequence Accession: | DQ228188 Prototheca wickerhamii strain SAG 263-11 plastid 6-phosphogluconolactonase mRNA, partial cds; nuclear gene for plastid product. (912 bp) |
| Sequence Accession: | DQ228189 Prototheca wickerhamii strain SAG 263-11 plastid ribose-phosphate diphosphokinase mRNA, partial cds; nuclear gene for plastid product. (667 bp) |
| Sequence Accession: | DQ228190 Prototheca wickerhamii strain SAG 263-11 plastid transaldolase 1 mRNA, partial cds; nuclear gene for plastid product. (788 bp) |
| Sequence Accession: | DQ228191 Prototheca wickerhamii strain SAG 263-11 plastid transaldolase 2 mRNA, partial cds; nuclear gene for plastid product. (1077 bp) |
| Sequence Accession: | DQ228192 Prototheca wickerhamii strain SAG 263-11 plastid glucose-1-phosphate adenylyltransferase large subunit mRNA, partial cds; nuclear gene for plastid product. (549 bp) |
| Sequence Accession: | DQ228193 Prototheca wickerhamii strain SAG 263-11 plastid alpha-amylase mRNA, partial cds; nuclear gene for plastid product. (490 bp) |
| Sequence Accession: | DQ228194 Prototheca wickerhamii strain SAG 263-11 plastid sulfolipid synthase mRNA, partial cds; nuclear gene for plastid product. (533 bp) |
| Sequence Accession: | DQ228195 Prototheca wickerhamii strain SAG 263-11 plastid serine O-acetyltransferase isoform A mRNA, partial cds; nuclear gene for plastid product. (922 bp) |
| Sequence Accession: | DQ228196 Prototheca wickerhamii strain SAG 263-11 plastid serine O-acetyltransferase isoform B mRNA, partial cds; nuclear gene for plastid product. (888 bp) |
| Sequence Accession: | DQ228197 Prototheca wickerhamii strain SAG 263-11 plastid homoserine kinase mRNA, partial cds; nuclear gene for plastid product. (724 bp) |
| Sequence Accession: | DQ228198 Prototheca wickerhamii strain SAG 263-11 plastid ArgJ mRNA, partial cds; nuclear gene for plastid product. (492 bp) |
| Sequence Accession: | DQ228199 Prototheca wickerhamii strain SAG 263-11 plastid aminotransferase mRNA, partial cds; nuclear gene for plastid product. (749 bp) |
| Sequence Accession: | DQ228200 Prototheca wickerhamii strain SAG 263-11 plastid dihydroorotate dehydrogenase mRNA, partial cds; nuclear gene for plastid product. (787 bp) |
| Sequence Accession: | DQ228201 Prototheca wickerhamii strain SAG 263-11 plastid auxin-regulated protein mRNA, partial cds; nuclear gene for plastid product. (675 bp) |
| Sequence Accession: | DQ228202 Prototheca wickerhamii strain SAG 263-11 plastid 2-C-methyl-D-erythritol-4-phosphate cytidylyltransferase mRNA, partial cds; nuclear gene for plastid product. (680 bp) |
| Sequence Accession: | DQ228203 Prototheca wickerhamii strain SAG 263-11 plastid lyt B-like protein (4-hydroxy-3-methylbut-2-enyl diphosphate reductase) mRNA, partial cds; nuclear gene for plastid product. (675 bp) |
| Sequence Accession: | DQ228204 Prototheca wickerhamii strain SAG 263-11 plastid chlorophyll synthase mRNA, partial cds; nuclear gene for plastid product. (611 bp) |
| Sequence Accession: | DQ228205 Prototheca wickerhamii strain SAG 263-11 plastid prenyated rab acceptor family protein mRNA, partial cds; nuclear gene for plastid product. (784 bp) |
| Sequence Accession: | KJ001761 Prototheca wickerhamii strain SAG 263-11 plastid, complete genome. (55636 bp) |
| Sequence Accession: | X74003 18S rRNA gene (1802 bp) |
| Sequence Accession: | AB097098 gene for 28S rRNA, partial sequence (575 bp) |
| Sequence Accession: | NC_001613 mitochondrion, complete genome (55328 bp) |
| Sequence Accession: | AY700210 Prototheca wickerhamii plastid histidinol dehydrogenase mRNA, partial cds; nuclear gene for plastid product. (649 bp) |
| Sequence Accession: | L42851 Prototheca wickerhamii large subunit ribosomal RNA (rrnL) gene, partial sequence; chloroplast gene for chloroplast product. (2715 bp) |
| Sequence Accession: | ERS1830133 1000 Plants (1kP) RNA-Seq Transcriptome Sample ID: BILC (0 bp) |
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| CRYO |
| Cryopreservation: | not detected |
| TEACHING |
| Recommended for teaching: | no |
