| SAG Strain Number: | 48.80 |
| TAXONOMY |
| Genus: | Chlorokybus |
| Species: | riethii |
| Taxonomic position: | Streptophyta - Chlorokybophyceae |
| Authority: | Irisarri, Darienko, Pröschold, Fürst-Jansen, Jamy et J.de Vries |
| Variety: | |
| Formerly called: | Chlorokybus atmophyticus Geitler |
| Authentic: | yes |
| Division: | Streptophyta |
| Class: | Chlorokybophyceae |
| ORIGIN |
| General habitat: | subaerial |
| Climatic zone: | temperate |
| Continent: | Europe |
| Country: | Italy |
| Locality: | Napoli, in enrichment culture of Porphyridium purpureum from the Mediterranean |
| Lat. / Long. (Precision): | |
| Year: | 1962 |
| Isolated by: | A. Rieth |
| Strain number by isolator: | LI 818 SV |
| Deposition by: | A. Rieth |
| Deposition date: | 03.1980 |
| CULTURE INFORMATION |
| Culture medium: | K Ag |
| Axenic: | bacterial or other types of contamination |
| Strain relatives: | CCAP 403/1; UTEX 2591 |
| Agitation resistance: | yes |
| Special properties: | NO known Nagoya Protocol restrictions for this strain; strain SAG 48.80 reassigned from non-authentic C. atmophyticus Geitler into authentic strain of Chlorokybus riethii Irisarri et al. sp. nov. acc. to Irisarri et al. 2021. SAG 03/2022; acc. to Rieth probably no contamination at his lab in Gatersleben (Germany), but a contamination of the original Naples sample. Tolerates NaCl concentrations up to 3% (Rieth 1972) |
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| PUBLICATIONS |
| Publication: | Irisarri I. et al. (2021) Unexpected cryptic species among streptophyte algae most distant to land plants. Proc. R. Soc. B: Biol. 288:20212168 |
| Publication: | Cocquyt, E. et al. (2010) Evolution and cytological diversification of the green seaweeds (Ulvophyceae). Mol Biol Evol 27 (9):2052-61 |
| Publication: | Cocquyt, E. et al. (2009) Gain and loss of elongation factor genes in green algae. BMC Evol. Biol. 9 (39) |
| Publication: | Lemieux C. et al. (2007) A clade uniting the green algae Mesostigma viride and Chlorokybus atmophyticus represents the deepest branch of the Streptophyta in chloroplast genome-based phylogenies. BMC Biol. 5 (2) |
| Publication: | Turmel M. et al. (2007) An unexpectedly large and loosely packed mitochondrial genome in the charophycean green alga Chlorokybus atmophyticus. BMC Genomics 8:137 |
| Publication: | Simon, D. et al. (2003) Phylogeny and self-splicing ability of the plastid tRNA-Leu group I Intron. J. Mol. Evol. 57 (6):710-720 |
| Publication: | Marin, B. et al. (1999) Mesostigmatophyceae, a New Class of Streptophyte Green Algae Revealed by SSU rRNA Sequence Comparisons. Protist 150:399-417 |
| Publication: | Lokhorst G.M. et al. (1988) THE ULTRASTRUCTURE OF MITOSIS AND CYTOKINESIS IN THE SARCINOID CHLOROKYBUS ATMOPHYTICUS (CHLOROPHYTA, CHAROPHYCEAE) REVEALED BY RAPID FREEZE FIXATION AND FREEZE SUBSTITUTION. J. Phycol. 24 (2):237-248 |
| Publication: | Rieth, A. (1972) Über Chlorokybus atmophyticus Geitler 1942. Arch. Protistenk. 114:330-342 |
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| SEQUENCE INFORMATION |
| Sequencing Project: | PRJNA20009 Chlorokybus atmophyticus mitochondrial genome |
| Sequencing Project: | PRJNA18717 Chlorokybus atmophyticus chloroplast genome |
| Sequencing Project: | SRX025846 Chlorokybus atmophyticus 454 sequencing parameters |
| Sequence Accession: | MW696190 Chlorokybus riethii strain SAG 48.80 SSU rRNA gene, partial sequence; ITS 1 5.8S rRNA gene, complete sequence; and ITS 2, partial sequence (2415 bp) |
| Sequence Accession: | AF481838 Chlorokybus atmophyticus strain SAG 48.80 voucher SAG:48.80 photosystem II CP43 protein (psbC) gene, partial cds; chloroplast. (939 bp) |
| Sequence Accession: | AY344772 Chlorokybus atmophyticus strain SAG 48.80 tRNA-Leu (trnL) gene, intron Group I; chloroplast. (228 bp) |
| Sequence Accession: | DQ270263 Chlorokybus atmophyticus strain SAG 48.80 glyceraldehyde-3-phosphate dehydrogenase subunit A (gapA) mRNA, partial cds. (1239 bp) |
| Sequence Accession: | DQ270268 Chlorokybus atmophyticus strain SAG 48.80 glyceraldehyde-3-phosphate dehydrogenase subunit B (gapB) mRNA, complete cds. (1444 bp) |
| Sequence Accession: | EF463011 Chlorokybus atmophyticus strain SAG 48.80 mitochondrion, complete genome. (201763 bp) |
| Sequence Accession: | HQ336949 Chlorokybus atmophyticus strain 48.80 histone H3 mRNA, partial cds. (365 bp) |
| Sequence Accession: | GQ421561 Chlorokybus atmophyticus strain 48.80 glucose-6-phosphate isomerase (GPI) mRNA, partial cds. (726 bp) |
| Sequence Accession: | NC_008822 chloroplast, complete genome (152254 bp) |
| Sequence Accession: | FJ715701 Chlorokybus atmophyticus strain 48.80 translation elongation factor-1 alpha mRNA, partial cds. (120 bp) |
| Sequence Accession: | DQ422812 Chlorokybus atmophyticus chloroplast, complete genome. (152254 bp) |
| Sequence Accession: | NC_009630 mitochondrion, complete genome (201763 bp) |
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| CRYO |
| Cryopreservation: | not detected |
| TEACHING |
| Recommended for teaching: | no |
