| SAG Strain Number: | 575-1b |
| TAXONOMY |
| Genus: | Oedogonium |
| Species: | cardiacum |
| Taxonomic position: | Chlorophyta - Chlorophyceae |
| Authority: | Wittrock |
| Variety: | |
| Formerly called: | |
| Authentic: | no |
| Division: | Chlorophyta |
| Class: | Chlorophyceae |
| Common name: | Green Algae - Chlorophytes |
| ORIGIN |
| General habitat: | freshwater |
| Climatic zone: | |
| Continent: | Europe |
| Country: | United Kingdom |
| Locality: | |
| Lat. / Long. (Precision): | |
| Year: | 1949 |
| Isolated by: | T. Christensen |
| Strain number by isolator: | |
| Deposition by: | |
| Deposition date: | |
| CULTURE INFORMATION |
| Culture medium: | NH4E and WC |
| Axenic: | bacterial or other types of contamination |
| Strain relatives: | CCAP 575/1B; UTEX 40 |
| Agitation resistance: | not detected |
| Special properties: | dioecious, female strain |
| |
| PUBLICATIONS |
| Publication: | Fucikova K. et al. (2016) Chloroplast phylogenomic data from the green algal order Sphaeropleales (Chlorophyceae, Chlorophyta) reveal complex patterns of sequence evolution. Mol Phylogenet Evol 98:176-83 |
| Publication: | Hunsperger, H.M. et al. (2015) Extensive horizontal gene transfer, duplication, and loss of chlorophyll synthesis genes in the algae. BMC Evol. Biol. 15 (16) |
| Publication: | Fucikova K. et al. (2014) New phylogenetic hypotheses for the core Chlorophyta based on chloroplast sequence data. Frontiers in Ecology and Evolution 2 |
| Publication: | Brouard, J.S. et al. (2008) Chloroplast DNA sequence of the green alga Oedogonium cardiacum (Chlorophyceae): unique genome architecture, derived characters shared with the Chaetophorales and novel genes acquired through horizontal transfer. BMC Genomics 9:290 |
| SEQUENCE INFORMATION |
| Sequencing Project: | PRJNA30587 Oedogonium cardiacum chloroplast, complete genome |
| Sequence Accession: | EF587319 Oedogonium cardiacum strain SAG 575-1b ATP synthase CF1 beta subunit (atpB) gene, complete cds; chloroplast. (1449 bp) |
| Sequence Accession: | EF587320 Oedogonium cardiacum strain SAG 575-1b ATP synthase CF1 epsilon subunit (atpE) gene, complete cds; chloroplast. (480 bp) |
| Sequence Accession: | EF587321 Oedogonium cardiacum strain SAG 575-1b ATP synthase CF0 subunit I (atpF) gene, complete cds; chloroplast. (534 bp) |
| Sequence Accession: | EF587322 Oedogonium cardiacum strain SAG 575-1b ATP synthase CF0 subunit III (atpH) gene, complete cds; chloroplast. (252 bp) |
| Sequence Accession: | EF587323 Oedogonium cardiacum strain SAG 575-1b ATP synthase CF0 subunit IV (atpI) gene, complete cds; chloroplast. (759 bp) |
| Sequence Accession: | EF587324 Oedogonium cardiacum strain SAG 575-1b heme attachment to plastid cytochrome c protein (ccsA) gene, complete cds; chloroplast. (1383 bp) |
| Sequence Accession: | EF587325 Oedogonium cardiacum strain SAG 575-1b chloroplast envelope membrane protein (cemA) gene, complete cds; chloroplast. (867 bp) |
| Sequence Accession: | EF587326 Oedogonium cardiacum strain SAG 575-1b protochlorophyllide reductase ChlB subunit (chlB) gene, complete cds; chloroplast. (1548 bp) |
| Sequence Accession: | EF587327 Oedogonium cardiacum strain SAG 575-1b protochlorophyllide reductase ATP-binding subunit (chlL) gene, complete cds; chloroplast. (867 bp) |
| Sequence Accession: | EF587328 Oedogonium cardiacum strain SAG 575-1b protochlorophyllide reductase ChlN subunit (chlN) gene, complete cds; chloroplast. (1320 bp) |
| Sequence Accession: | EF587329 Oedogonium cardiacum strain SAG 575-1b clp protease proteolytic subunit 2 (clpP) gene, complete cds; chloroplast. (1683 bp) |
| Sequence Accession: | EF587330 Oedogonium cardiacum strain SAG 575-1b cytochrome b6/f complex apocytochrome b6 (petB) gene, complete cds; chloroplast. (648 bp) |
| Sequence Accession: | EF587331 Oedogonium cardiacum strain SAG 575-1b cytochrome b6/f complex subunit IV (petD) gene, exon 1 and partial cds; chloroplast. (100 bp) |
| Sequence Accession: | EF587332 Oedogonium cardiacum strain SAG 575-1b cytochrome b6/f complex subunit IV (petD) gene, exon 2 and partial cds; chloroplast. (479 bp) |
| Sequence Accession: | EF587333 Oedogonium cardiacum strain SAG 575-1b cytochrome b6/f complex subunit V (petG) gene, complete cds; chloroplast. (114 bp) |
| Sequence Accession: | EF587334 Oedogonium cardiacum strain SAG 575-1b cytochrome b6/f complex subunit VI (petL) gene, complete cds; chloroplast. (99 bp) |
| Sequence Accession: | EF587335 Oedogonium cardiacum strain SAG 575-1b photosystem I P700 apoprotein A1 (psaA) gene, complete cds; chloroplast. (2256 bp) |
| Sequence Accession: | EF587336 Oedogonium cardiacum strain SAG 575-1b photosystem I P700 apoprotein A2 (psaB) gene, complete cds; chloroplast. (2208 bp) |
| Sequence Accession: | EF587337 Oedogonium cardiacum strain SAG 575-1b photosystem I subunit VII (psaC) gene, exon 1 and partial cds; chloroplast. (100 bp) |
| Sequence Accession: | EF587338 Oedogonium cardiacum strain SAG 575-1b photosystem I subunit VII (psaC) gene, exon 2 and partial cds; chloroplast. (221 bp) |
| Sequence Accession: | EF587339 Oedogonium cardiacum strain SAG 575-1b photosystem I subunit IX (psaJ) gene, complete cds; chloroplast. (126 bp) |
| Sequence Accession: | EF587340 Oedogonium cardiacum strain SAG 575-1b photosystem II D1 reaction center protein (psbA) gene, exons 10, 11 and partial cds; and putative site-specific DNA endonuclease (orf258) gene, complete cds; chloroplast. (1412 bp) |
| Sequence Accession: | EF587341 Oedogonium cardiacum strain SAG 575-1b photosystem II CP47 chlorophyll apoprotein (psbB) gene, complete cds; chloroplast. (2324 bp) |
| Sequence Accession: | EF587342 Oedogonium cardiacum strain SAG 575-1b photosystem II CP43 chlorophyll apoprotein (psbC) gene, complete cds; chloroplast. (3347 bp) |
| Sequence Accession: | EF587343 Oedogonium cardiacum strain SAG 575-1b photosystem II D2 reaction center protein (psbD) gene, complete cds; chloroplast. (1080 bp) |
| Sequence Accession: | EF587344 Oedogonium cardiacum strain SAG 575-1b photosystem II cytochrome b559 alpha subunit (psbE) gene, complete cds; chloroplast. (246 bp) |
| Sequence Accession: | EF587345 Oedogonium cardiacum strain SAG 575-1b photosystem II cytochrome b559 beta subunit (psbF) gene, complete cds; chloroplast. (150 bp) |
| Sequence Accession: | EF587346 Oedogonium cardiacum strain SAG 575-1b photosystem II 10 KDa phosphoprotein (psbH) gene, complete cds; chloroplast. (261 bp) |
| Sequence Accession: | EF587347 Oedogonium cardiacum strain SAG 575-1b photosystem II I polypeptide (psbI) and putative reverse transcriptase (orf458) genes, complete cds; chloroplast. (2591 bp) |
| Sequence Accession: | EF587348 Oedogonium cardiacum strain SAG 575-1b photosystem II J protein (psbJ) gene, complete cds; chloroplast. (129 bp) |
| Sequence Accession: | EF587349 Oedogonium cardiacum strain SAG 575-1b photosystem II K protein (psbK) gene, complete cds; chloroplast. (222 bp) |
| Sequence Accession: | EF587350 Oedogonium cardiacum strain SAG 575-1b photosystem II L protein (psbL) gene, complete cds; chloroplast. (183 bp) |
| Sequence Accession: | EF587351 Oedogonium cardiacum strain SAG 575-1b photosystem II M protein (psbM) gene, complete cds; chloroplast. (105 bp) |
| Sequence Accession: | EF587352 Oedogonium cardiacum strain SAG 575-1b photosystem II N protein (psbN) gene, complete cds; chloroplast. (135 bp) |
| Sequence Accession: | EF587353 Oedogonium cardiacum strain SAG 575-1b photosystem II T protein (psbT) gene, complete cds; chloroplast. (96 bp) |
| Sequence Accession: | EF587354 Oedogonium cardiacum strain SAG 575-1b photosystem II Z protein (psbZ) gene, complete cds; chloroplast. (189 bp) |
| Sequence Accession: | EF587355 Oedogonium cardiacum strain SAG 575-1b ribulose-1,5-bisphosphate carboxylase/oxygenase large subunit (rbcL) gene, complete cds; chloroplast. (1428 bp) |
| Sequence Accession: | EF587356 Oedogonium cardiacum strain SAG 575-1b ribosomal protein L2 (rpl2) gene, complete cds; chloroplast. (831 bp) |
| Sequence Accession: | EF587357 Oedogonium cardiacum strain SAG 575-1b ribosomal protein L5 (rpl5) gene, complete cds; chloroplast. (543 bp) |
| Sequence Accession: | EF587358 Oedogonium cardiacum strain SAG 575-1b ribosomal protein L14 (rpl14) gene, complete cds; chloroplast. (366 bp) |
| Sequence Accession: | EF587359 Oedogonium cardiacum strain SAG 575-1b ribosomal protein L16 (rpl16) gene, complete cds; chloroplast. (444 bp) |
| Sequence Accession: | EF587360 Oedogonium cardiacum strain SAG 575-1b ribosomal protein L20 (rpl20) gene, complete cds; chloroplast. (360 bp) |
| Sequence Accession: | EF587361 Oedogonium cardiacum strain SAG 575-1b ribosomal protein L23 (rpl23) gene, complete cds; chloroplast. (408 bp) |
| Sequence Accession: | EF587362 Oedogonium cardiacum strain SAG 575-1b ribosomal protein L36 (rpl36) gene, complete cds; chloroplast. (114 bp) |
| Sequence Accession: | EF587363 Oedogonium cardiacum strain SAG 575-1b RNA polymerase alpha subunit (rpoA) gene, complete cds; chloroplast. (1329 bp) |
| Sequence Accession: | EF587364 Oedogonium cardiacum strain SAG 575-1b RNA polymerase beta subunit (rpoBa) gene, complete cds; chloroplast. (2019 bp) |
| Sequence Accession: | EF587365 Oedogonium cardiacum strain SAG 575-1b RNA polymerase beta subunit (rpoBb) gene, complete cds; chloroplast. (2220 bp) |
| Sequence Accession: | EF587366 Oedogonium cardiacum strain SAG 575-1b RNA polymerase beta' subunit (rpoC1) gene, complete cds; chloroplast. (5844 bp) |
| Sequence Accession: | EF587367 Oedogonium cardiacum strain SAG 575-1b RNA polymerase beta'' subunit (rpoC2) gene, complete cds; chloroplast. (7854 bp) |
| Sequence Accession: | EF587368 Oedogonium cardiacum strain SAG 575-1b ribosomal protein S2 (rps2) gene, complete cds; chloroplast. (924 bp) |
| Sequence Accession: | EF587369 Oedogonium cardiacum strain SAG 575-1b ribosomal protein S3 (rps3) gene, complete cds; chloroplast. (1791 bp) |
| Sequence Accession: | EF587370 Oedogonium cardiacum strain SAG 575-1b ribosomal protein S4 (rps4) gene, complete cds; chloroplast. (8406 bp) |
| Sequence Accession: | EF587371 Oedogonium cardiacum strain SAG 575-1b ribosomal protein S8 (rps8) gene, complete cds; chloroplast. (543 bp) |
| Sequence Accession: | EF587372 Oedogonium cardiacum strain SAG 575-1b ribosomal protein S9 (rps9) gene, complete cds; chloroplast. (426 bp) |
| Sequence Accession: | EF587373 Oedogonium cardiacum strain SAG 575-1b ribosomal protein S12 (rps12) gene, complete cds; chloroplast. (390 bp) |
| Sequence Accession: | EF587374 Oedogonium cardiacum strain SAG 575-1b ribosomal protein S14 (rps14) gene, complete cds; chloroplast. (303 bp) |
| Sequence Accession: | EF587375 Oedogonium cardiacum strain SAG 575-1b translational elongation factor Tu (tufA) gene, complete cds; chloroplast. (1257 bp) |
| Sequence Accession: | EF587376 Oedogonium cardiacum strain SAG 575-1b hypothetical protein RF3 (ycf3) gene, complete cds; chloroplast. (504 bp) |
| Sequence Accession: | EF587377 Oedogonium cardiacum strain SAG 575-1b hypothetical protein RF4 (ycf4) gene, complete cds; chloroplast. (573 bp) |
| Sequence Accession: | EF587378 Oedogonium cardiacum strain SAG 575-1b hypothetical protein RF12 (ycf12) gene, complete cds; chloroplast. (102 bp) |
| Sequence Accession: | EU123943 Oedogonium cardiacum strain SAG 575-1b 18S ribosomal RNA gene, partial sequence. (1689 bp) |
| Sequence Accession: | NC_011031 chloroplast, complete genome (196547 bp) |
| Sequence Accession: | EU677193 chloroplast, complete genome. (196547 bp) |
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| CRYO |
| Cryopreservation: | not detected |
| TEACHING |
| Recommended for teaching: | no |
