| SAG Strain Number: | 63-3 |
| TAXONOMY |
| Genus: | Polytomella |
| Species: | parva |
| Taxonomic position: | Chlorophyta - Chlorophyceae |
| Authority: | Pringsheim |
| Variety: | |
| Formerly called: | |
| Authentic: | yes |
| Division: | Chlorophyta |
| Class: | Chlorophyceae |
| Common name: | Green Algae - Chlorophytes |
| ORIGIN |
| General habitat: | freshwater |
| Climatic zone: | temperate |
| Continent: | Europe |
| Country: | United Kingdom |
| Locality: | Cambridge, artificial garden basin in Shelford |
| Lat. / Long. (Precision): | 52.142872 / 0.130683 (1500m) View on Google Maps |
| Year: | 1949 |
| Isolated by: | E. G. Pringsheim |
| Strain number by isolator: | strain 4 |
| Deposition by: | E.G. Pringsheim (SAG) |
| Deposition date: | 1954 |
| CULTURE INFORMATION |
| Culture medium: | ErbsMS |
| Axenic: | bacterial or other types of contamination |
| Strain relatives: | probably CCAP 63/1; UTEX 193; ATCC 12910 |
| Agitation resistance: | not detected |
| Special properties: | NO known Nagoya Protocol restrictions for this strain |
| |
| PUBLICATIONS |
| Publication: | MacDonald, S. M. et al. (2015) Validation of Polytomella piriformis nomen nudum (Chlamydomonadaceae): a Distinct Lineage Within a Genus of Nonphotosynthetic Green Algae. J Eukaryot Microbiol 62 (6):840-4 |
| Publication: | Smith D.R. et al. (2014) A plastid without a genome: evidence from the nonphotosynthetic green alga Polytomella. Plant Physiology :113.233718 |
| Publication: | Smith, D. R. et al. (2014) A plastid without a genome: evidence from the nonphotosynthetic green algal genus Polytomella. Plant Physiol 164 (4):1812-9 |
| Publication: | Smith D.R. et al. (2013) Palindromic Genes in the Linear Mitochondrial Genome of the Nonphotosynthetic Green Alga Polytomella magna. Genome Biol. Evol. 5 (9):1661-1667 |
| Publication: | Smith D.R. et al. (2011) Nucleotide diversity of the colorless green alga Polytomella parva (Chlorophyceae, Chlorophyta): high for the mitochondrial telomeres, surprisingly low everywhere else. J. Eukaryot. Microbiol. 58 (5):471-473 |
| Publication: | Mallet, M.A. et al. (2006) Identification of three distinct Polytomella lineages based on mitochondrial DNA features. J. Eukaryot. Microbiol. 53 (2):79-84 |
| Publication: | Schulze D. et al. (1987) Immunolocalization of a Ca2+ -modulated contractile protein in the flagellar apparatus of green algae: the nucleus-basal body connector. Eur J Cell Biol 45:51-61 |
| Publication: | Reed et al. (1976) Preservation of Encysted Polytomella. J. Gen. Microbiol. 97:29-34 |
| Publication: | Pringsheim, E.G. (1955) The genus Polytomella. J. Protozool. 2 (4):137-145 |
| show more publications ... |
| SEQUENCE INFORMATION |
| Sequencing Project: | PRJNA222669 Genome sequencing of the non-photosynthetic alga Polytomella parva SAG 63-3 |
| Sequence Accession: | HQ585012 Polytomella parva strain SAG 63-3 NADH dehydrogenase subunit 2 (nad2) gene, partial cds; large subunit ribosomal RNA (rrnL8), large subunit ribosomal RNA (rrnL2), and small subunit ribosomal RNA (rrnS3) genes, complete sequence; and NADH dehydrogenas (1303 bp) |
| Sequence Accession: | HQ585007 Polytomella parva strain SAG 63-3 NADH dehydrogenase subunit 5 (nad5) gene, partial cds; large subunit ribosomal RNA (rrnL1), small subunit ribosomal RNA (rrnS4), large subunit ribosomal RNA (rrnL5), large subunit ribosomal RNA (rrnL4), small subunit (3826 bp) |
| Sequence Accession: | HQ585002 Polytomella parva strain SAG 63-3 cytochrome b (cob) gene, partial cds; small subunit ribosomal RNA (rrnS1) and large subunit ribosomal RNA (rrnL7) genes, complete sequence; cytochrome oxidase subunit 1 (cox1) gene, complete cds; and NADH dehydrogena (3246 bp) |
| Sequence Accession: | HQ584996 Polytomella parva strain SAG 63-3 mitochondrial cytochrome c oxidase subunit III (cox3) gene, partial cds; nuclear gene for mitochondrial product. (1775 bp) |
| Sequence Accession: | HQ584991 Polytomella parva strain SAG 63-3 18S ribosomal RNA gene, partial sequence. (1032 bp) |
| Sequence Accession: | DQ782754 Polytomella parva acetyl CoA synthetase mRNA, partial cds. (657 bp) |
| Sequence Accession: | DQ782740 Polytomella parva GrpE mRNA, partial cds. (417 bp) |
| Sequence Accession: | DQ782741 Polytomella parva heat shock protein 10 mRNA, partial cds. (543 bp) |
| Sequence Accession: | DQ782742 Polytomella parva Tic 20-like protein mRNA, partial cds. (588 bp) |
| Sequence Accession: | DQ782743 Polytomella parva plastid ATP/ADP transporter mRNA, partial cds; nuclear gene for plastid product. (1695 bp) |
| Sequence Accession: | DQ782745 Polytomella parva ABC superfamily ATPase mRNA, partial cds. (711 bp) |
| Sequence Accession: | DQ782746 Polytomella parva Fe-S cluster assembly protein NifU mRNA, partial cds. (504 bp) |
| Sequence Accession: | DQ782747 Polytomella parva antenna size regulatory protein mRNA, partial cds. (501 bp) |
| Sequence Accession: | DQ782748 Polytomella parva fructose 1,6 bisphosphate aldolase 1 mRNA, partial cds. (561 bp) |
| Sequence Accession: | DQ782749 Polytomella parva phosphoglycerate kinase mRNA, partial cds. (462 bp) |
| Sequence Accession: | DQ782750 Polytomella parva phosphoglycerate kinase mRNA, partial cds. (777 bp) |
| Sequence Accession: | DQ782751 Polytomella parva phosphoglucomutase mRNA, partial cds. (501 bp) |
| Sequence Accession: | DQ782752 Polytomella parva phosphoglycerate dehydrogenase mRNA, partial cds. (576 bp) |
| Sequence Accession: | DQ782753 Polytomella parva plastid acetyl CoA synthetase mRNA, partial cds; nuclear gene for plastid product. (720 bp) |
| Sequence Accession: | DQ782755 Polytomella parva plastid triose phosphate isomerase mRNA, partial cds; nuclear gene for plastid product. (678 bp) |
| Sequence Accession: | DQ782756 Polytomella parva 1,4 alpha-glucan branching enzyme mRNA, partial cds. (336 bp) |
| Sequence Accession: | DQ782757 Polytomella parva alpha-1,4-glucan phosphorylase mRNA, partial cds. (231 bp) |
| Sequence Accession: | DQ782758 Polytomella parva isoamylase-type starch debranching enzyme mRNA, partial cds. (300 bp) |
| Sequence Accession: | DQ782759 Polytomella parva 6-phosphogluconate dehydrogenase decarboxylating mRNA, partial cds. (318 bp) |
| Sequence Accession: | DQ782760 Polytomella parva 6-phosphogluconolactonase mRNA, partial cds. (441 bp) |
| Sequence Accession: | DQ782761 Polytomella parva pfkB-type carbohydrate kinase mRNA, partial cds. (339 bp) |
| Sequence Accession: | DQ782762 Polytomella parva 6,7-dimethyl-8-ribityllumazine synthase mRNA, partial cds. (375 bp) |
| Sequence Accession: | DQ782763 Polytomella parva omega-6 fatty acid desaturase mRNA, partial cds. (648 bp) |
| Sequence Accession: | DQ782764 Polytomella parva biotin carboxyl carrier protein mRNA, partial cds. (243 bp) |
| Sequence Accession: | DQ782766 Polytomella parva 3-oxoacyl-ACP synthase mRNA, partial cds. (207 bp) |
| Sequence Accession: | DQ782767 Polytomella parva 3-oxoacyl-(acyl-carrier-protein) reductase mRNA, partial cds. (669 bp) |
| Sequence Accession: | DQ782769 Polytomella parva acyl carrier protein, isoform 2 mRNA, partial cds. (336 bp) |
| Sequence Accession: | DQ782770 Polytomella parva 3-deoxy-D-arabino-heptulosonate 7-phosphate synthase mRNA, partial cds. (396 bp) |
| Sequence Accession: | DQ782771 Polytomella parva tryptophan synthase, alpha chain mRNA, partial cds. (417 bp) |
| Sequence Accession: | DQ782772 Polytomella parva acetolactate synthase, small subunit mRNA, partial cds. (477 bp) |
| Sequence Accession: | DQ782773 Polytomella parva ketol-acid reductoisomerase mRNA, partial cds. (507 bp) |
| Sequence Accession: | DQ782774 Polytomella parva 3-isopropylmalate dehydratase mRNA, partial cds. (549 bp) |
| Sequence Accession: | DQ782775 Polytomella parva tetrahydrofolate dehydrogenase/cyclohydrolase mRNA, partial cds. (951 bp) |
| Sequence Accession: | DQ782776 Polytomella parva cysteine synthase mRNA, partial cds. (291 bp) |
| Sequence Accession: | DQ782777 Polytomella parva cysteine synthase mRNA, partial cds. (609 bp) |
| Sequence Accession: | DQ782778 Polytomella parva aspartate semialdehyde dehydrogenase mRNA, partial cds. (453 bp) |
| Sequence Accession: | DQ782779 Polytomella parva L aspartate oxidase mRNA, partial cds. (285 bp) |
| Sequence Accession: | DQ782782 Polytomella parva arginine biosynthesis protein mRNA, partial cds. (600 bp) |
| Sequence Accession: | DQ782783 Polytomella parva arginine biosynthesis protein mRNA, partial cds. (654 bp) |
| Sequence Accession: | DQ782784 Polytomella parva acetylornithine aminotransferase mRNA, partial cds. (573 bp) |
| Sequence Accession: | DQ782785 Polytomella parva ATP-phosphoribosyltransferase mRNA, partial cds. (621 bp) |
| Sequence Accession: | DQ782786 Polytomella parva adenylosuccinate lyase mRNA, partial cds. (405 bp) |
| Sequence Accession: | DQ782787 Polytomella parva adenylosuccinate synthetase mRNA, partial cds. (360 bp) |
| Sequence Accession: | DQ782788 Polytomella parva adenylate kinase mRNA, partial cds. (477 bp) |
| Sequence Accession: | DQ782790 Polytomella parva plastid 2-Cys peroxiredoxin mRNA, partial cds; nuclear gene for plastid product. (603 bp) |
| Sequence Accession: | DQ782791 Polytomella parva iron superoxide dismutase, isoform 1 mRNA, partial cds. (468 bp) |
| Sequence Accession: | DQ782792 Polytomella parva iron superoxide dismutase, isoform 2 mRNA, partial cds. (138 bp) |
| Sequence Accession: | DQ782793 Polytomella parva NADH dehydrogenase protein family mRNA, partial cds. (294 bp) |
| Sequence Accession: | DQ782794 Polytomella parva chloroplast sulfate-binding protein mRNA, partial cds; nuclear gene for chloroplast product. (708 bp) |
| Sequence Accession: | DQ782795 Polytomella parva glutamyl-tRNA synthetase mRNA, partial cds. (585 bp) |
| Sequence Accession: | DQ782796 Polytomella parva uroporphyrinogen decarboxylase mRNA, partial cds. (663 bp) |
| Sequence Accession: | DQ782797 Polytomella parva uroporphyrinogen decarboxylase mRNA, partial cds. (105 bp) |
| Sequence Accession: | DQ782798 Polytomella parva coproporphyrinogen III oxidase mRNA, partial cds. (579 bp) |
| Sequence Accession: | DQ782799 Polytomella parva prenylated Rab acceptor protein 1 mRNA, partial cds. (432 bp) |
| Sequence Accession: | DQ782800 Polytomella parva PRLI interacting factor L-like protein mRNA, partial cds. (525 bp) |
| Sequence Accession: | KT591082 Polytomella parva strain SAG 63-3 cytochrome c oxidase subunit 1 (cox1) gene, complete cds; mitochondrial. (1512 bp) |
| Sequence Accession: | KT591090 Polytomella parva strain SAG 63-3 chromosome 1 telomere; mitochondrial. (1085 bp) |
| Sequence Accession: | KP299173 Polytomella parva strain SAG 63-3 clone 7.2.4 18S ribosomal RNA gene, partial sequence. (1839 bp) |
| Sequence Accession: | DQ782739 Polytomella parva polyA-binding protein mRNA, partial cds. (1089 bp) |
| Sequence Accession: | DQ782744 Polytomella parva plastid triose phosphate/phosphate translocator mRNA, complete cds; nuclear gene for plastid product. (1164 bp) |
| Sequence Accession: | DQ782765 Polytomella parva enoyl-ACP reductase mRNA, complete cds. (1023 bp) |
| Sequence Accession: | DQ782768 Polytomella parva acyl carrier protein, isoform 1 mRNA, complete cds. (384 bp) |
| Sequence Accession: | DQ782780 Polytomella parva glutathione synthetase mRNA, partial cds. (315 bp) |
| Sequence Accession: | DQ782781 Polytomella parva acetylglutamate kinase mRNA, complete cds. (990 bp) |
| Sequence Accession: | DQ782789 Polytomella parva peroxiredoxin II mRNA, partial cds. (447 bp) |
| show more sequences ... |
| CRYO |
| Cryopreservation: | not detected |
| TEACHING |
| Recommended for teaching: | no |
